PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g009580.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 435aa MW: 49240 Da PI: 6.9137

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g009580.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	61.9	1.3e-19	190	239	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 W LH++Fve+v+ L G ++A Pk++ elm+++ Lt ++++SHLQkYRl Solyc07g009580.1.1 190 LWRDPLHNKFVEVVDIL-GVKNARPKKVHELMNMPELTKKQIASHLQKYRL 239 5999***********.9*****************************8 PP
2	Response_reg	40.1	2e-14	11	114	1	105
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l+vdD + ++ +++ l+ +++ ev + + e al l+ + +Dl+l+Di m +md +++l+ei++e ++pi +++ ++++++++ Solyc07g009580.1.1 11 ILVVDDINCNLTTIAS-LKYSQF-EVMIVNSIEVALGGLRSSGlsFDLLLTDIHMLKMDVFQFLQEIAKEF-DIPICFMSNDKKDSTLIKG 98 899*9999999986.788.************999888******************9988.9************** PP HHTTESEEEESS--HH CS Response_reg 90 lkaGakdflsKpfdpe 105 l+ a f Kp+ ++ Solyc07g009580.1.1 99 LDNRAVFFTLKPITQD 114 **********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	2.85E-16	8	131	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	2.5E-18	8	131	No hit	No description
SMART	SM00448	8.2E-8	9	120	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	20.027	10	124	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.1E-10	11	114	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.07E-12	12	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-19	184	243	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-13	185	243	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	190	239	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MEVENSKKGR ILVVDDINCN LTTIASLKYS QFEVMIVNSI EVALGGLRSS GLSFDLLLTD 60 IHMLKMDVFQ FLQEIAKEFD IPICFMSNDK KDSTLIKGLD NRAVFFTLKP ITQDGINYLW 120 NYATSLGKKK HKGKQVVQVF EENTNEKILN EVIDIESPSF VSKKDKSIRK YDDVENKDYS 180 SQRAKKSITL WRDPLHNKFV EVVDILGVKN ARPKKVHELM NMPELTKKQI ASHLQKYRLT 240 LDKKPNPKLV LDSSKTTSGN ANQLSIKTDN ISALAPQVMT KNLNNAGPDT EPDLRNFMSD 300 YEKDRNFSNI LSRHLNQKPC KLQGNHEGIN ADGISLQLGN VLPNSNLEQG KYANITAKER 360 PLHSRTVSPN LALQQEIYGD VTAEDALFDH LNVRSNSENG SRDYESFTAE DWSFLNSLLL 420 DHELEVVSYI HFVC*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MEVENSKKGR ILVVDDINCN LTTIASLKYS QFEVMIVNSI EVALGGLRSS GLSFDLLLTD  60
IHMLKMDVFQ FLQEIAKEFD IPICFMSNDK KDSTLIKGLD NRAVFFTLKP ITQDGINYLW  120
NYATSLGKKK HKGKQVVQVF EENTNEKILN EVIDIESPSF VSKKDKSIRK YDDVENKDYS  180
SQRAKKSITL WRDPLHNKFV EVVDILGVKN ARPKKVHELM NMPELTKKQI ASHLQKYRLT  240
LDKKPNPKLV LDSSKTTSGN ANQLSIKTDN ISALAPQVMT KNLNNAGPDT EPDLRNFMSD  300
YEKDRNFSNI LSRHLNQKPC KLQGNHEGIN ADGISLQLGN VLPNSNLEQG KYANITAKER  360
PLHSRTVSPN LALQQEIYGD VTAEDALFDH LNVRSNSENG SRDYESFTAE DWSFLNSLLL  420
DHELEVVSYI HFVC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	5e-13	185	243	4	62	ARR10-B
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g009580.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253659	1e-170	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-33k4 map 7, complete sequence
GenBank	AC253666	1e-170	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48d7 map 7, complete sequence
GenBank	AC253989	1e-170	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-46l4 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027774110.1	0.0	two-component response regulator ARR14-like
TrEMBL	A0A3Q7I1R0	0.0	A0A3Q7I1R0_SOLLC; Uncharacterized protein
STRING	Solyc07g009580.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15814	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	5e-35	response regulator 1

Link Out ? help Back to Top
Phytozome	Solyc07g009580.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]