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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g008730.1.1 |
Common Name | LOC101259264 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HB-PHD |
Protein Properties |
Length: 708aa MW: 80117.2 Da PI: 7.712 |
Description |
HB-PHD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g008730.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 40.5 | 4.6e-13 | 491 | 535 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
++ +eeL ++F++n ps+e re L+kklg++ ++V WF+N R+
Solyc07g008730.1.1 491 PDAVEELRRVFAENELPSREVRENLSKKLGIEYEKVNKWFKNARY 535
6889****************************************8 PP
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2 | PHD | 33.9 | 7.2e-12 | 219 | 274 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
+C+ C+ +++ +++++lCd +C+ +fH++Cl+++l+++++p + w+C+ Ck+k
Solyc07g008730.1.1 219 ICAKCKLQEAfpDNDIILCDgTCNCAFHQECLDPPLSTDNIPPDdeGWFCKFCKCK 274
588898844445********56*******************99999*******985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 708 aa
Download sequence Send
to blast |
MPGKTDKDMH KAVASSSQVK NVLRRLEKKR SRLKSKSHGR STRASSSKRR VAGDGKVKCC 60 SGENILKNEI LKQAKSSKKQ SVLSCEAEKL QACNSKDNLK HDNLDTGSEK LKRRRKRRRR 120 KHNADPDDVS RLQRRTRYLL IKMKLEQNLI DAYSAEGWKG QSREKIRPER ELQRAKKQIL 180 NCKLGIREIV HRLDLLSSAG QIDDSAISPN GSVHHEHIIC AKCKLQEAFP DNDIILCDGT 240 CNCAFHQECL DPPLSTDNIP PDDEGWFCKF CKCKMEIIEA TNAHIGTHFA MDSNWENIFK 300 EEALLPEGEE SLLCPEQDWP SDDSEDDDYD PEKVANSHNS TDSFESGSSS EASSGSMLGS 360 LEDELLALTG KPEDGSGGKD YLSEHIAVSD YEETTDFEVL SGPRQRKAVD YIKLNDEMFG 420 KHAPVIEQNS EDEDWGPGKR KRRRKEPESD AASTLITLFE SERSCPEKKV NEVEKESFGR 480 PAKREIFRIP PDAVEELRRV FAENELPSRE VRENLSKKLG IEYEKVNKWF KNARYTALKA 540 RKVEGTKPCQ ATSPTTSVGC TPETVKGEPA DHISSSDAEE NAAQAPNEET SNLVIRPSKK 600 KHDKKAVITS IDRVETLVES GDDVSLKLLR DRAKKQRRKL ISKEREKIQE AEAEAEMQEL 660 CRIKDKIARL QDILRRFPNH RCRRADTSSL DESLIVFVPV AQLQEKR*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 112 | 120 | RRRKRRRRK |
2 | 438 | 443 | KRKRRR |
3 | 438 | 444 | KRKRRRK |
4 | 439 | 443 | RKRRR |
5 | 439 | 445 | RKRRRKE |
Functional Description ? help
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Source |
Description |
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By pathogen infection. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | L41253 | 2e-07 | Lycopersicon esculentum Hsc70 (Hsc70) gene, complete cds |