PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g008730.1.1 | ||||||||
Common Name | LOC101259264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HB-PHD | ||||||||
Protein Properties | Length: 708aa MW: 80117.2 Da PI: 7.712 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.5 | 4.6e-13 | 491 | 535 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +eeL ++F++n ps+e re L+kklg++ ++V WF+N R+ Solyc07g008730.1.1 491 PDAVEELRRVFAENELPSREVRENLSKKLGIEYEKVNKWFKNARY 535 6889****************************************8 PP | |||||||
2 | PHD | 33.9 | 7.2e-12 | 219 | 274 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+ +fH++Cl+++l+++++p + w+C+ Ck+k Solyc07g008730.1.1 219 ICAKCKLQEAfpDNDIILCDgTCNCAFHQECLDPPLSTDNIPPDdeGWFCKFCKCK 274 588898844445********56*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.32E-14 | 210 | 277 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 3.0E-11 | 215 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.202 | 217 | 274 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.4E-9 | 219 | 272 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 6.3E-9 | 219 | 274 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 220 | 271 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd15504 | 7.69E-28 | 220 | 271 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 477 | 534 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-11 | 479 | 542 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.94 | 480 | 540 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-11 | 482 | 544 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-9 | 483 | 535 | No hit | No description |
Pfam | PF00046 | 1.6E-10 | 491 | 535 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MPGKTDKDMH KAVASSSQVK NVLRRLEKKR SRLKSKSHGR STRASSSKRR VAGDGKVKCC 60 SGENILKNEI LKQAKSSKKQ SVLSCEAEKL QACNSKDNLK HDNLDTGSEK LKRRRKRRRR 120 KHNADPDDVS RLQRRTRYLL IKMKLEQNLI DAYSAEGWKG QSREKIRPER ELQRAKKQIL 180 NCKLGIREIV HRLDLLSSAG QIDDSAISPN GSVHHEHIIC AKCKLQEAFP DNDIILCDGT 240 CNCAFHQECL DPPLSTDNIP PDDEGWFCKF CKCKMEIIEA TNAHIGTHFA MDSNWENIFK 300 EEALLPEGEE SLLCPEQDWP SDDSEDDDYD PEKVANSHNS TDSFESGSSS EASSGSMLGS 360 LEDELLALTG KPEDGSGGKD YLSEHIAVSD YEETTDFEVL SGPRQRKAVD YIKLNDEMFG 420 KHAPVIEQNS EDEDWGPGKR KRRRKEPESD AASTLITLFE SERSCPEKKV NEVEKESFGR 480 PAKREIFRIP PDAVEELRRV FAENELPSRE VRENLSKKLG IEYEKVNKWF KNARYTALKA 540 RKVEGTKPCQ ATSPTTSVGC TPETVKGEPA DHISSSDAEE NAAQAPNEET SNLVIRPSKK 600 KHDKKAVITS IDRVETLVES GDDVSLKLLR DRAKKQRRKL ISKEREKIQE AEAEAEMQEL 660 CRIKDKIARL QDILRRFPNH RCRRADTSSL DESLIVFVPV AQLQEKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRRKRRRRK |
2 | 438 | 443 | KRKRRR |
3 | 438 | 444 | KRKRRRK |
4 | 439 | 443 | RKRRR |
5 | 439 | 445 | RKRRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g008730.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | L41253 | 2e-07 | Lycopersicon esculentum Hsc70 (Hsc70) gene, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242815.1 | 0.0 | pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48785 | 1e-144 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A3Q7H4G0 | 0.0 | A0A3Q7H4G0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g008730.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10684 | 21 | 23 | Representative plant | OGRP1830 | 15 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-94 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g008730.1.1 |
Entrez Gene | 101259264 |
Publications ? help Back to Top | |||
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