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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc07g008180.2.1 |
| Common Name | LOC101247536 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
YABBY |
| Protein Properties |
Length: 181aa MW: 20341.2 Da PI: 8.4989 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc07g008180.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 218.9 | 1.5e-67 | 6 | 163 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
+ +s+q+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q ++ s ++++ + + e +++ + ++ ++++ s +
Solyc07g008180.2.1 6 DVASDQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHQVPNYTAPEYRMDFGSSTKCNMNRMSMR- 95
5689*******************************************9999998888875555555555555554443333333333222. PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ +++v + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
Solyc07g008180.2.1 96 --------TPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163
........23333333344589****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MASCIDVASD QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60
SASWQNHQVP NYTAPEYRMD FGSSTKCNMN RMSMRTPITN NVHEERIVNR PPEKRQRVPS 120
AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNNQ AKLACGSRKL 180
*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232631 | 2e-69 | Solanum lycopersicum chromosome 7 clone C07SLe0071O22, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
Plant Cell, 2015. 27(12): p. 3321-35
[PMID:26589551]
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