PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 212aa MW: 24522.1 Da PI: 9.4802

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g008010.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.9e-18	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl Solyc07g008010.2.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 59 799*******************************************97 PP
2	Myb_DNA-binding	49.9	7.5e-16	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Solyc07g008010.2.1 65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110 6789****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.716	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	7.03E-29	9	106	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-14	11	61	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-15	12	59	IPR001005	SANT/Myb domain
CDD	cd00167	5.71E-11	15	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-21	15	66	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-14	64	112	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.586	64	114	IPR017930	Myb domain
Pfam	PF00249	2.1E-14	65	110	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-22	67	113	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-10	68	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MKDKDVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR 60 PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NNKRSCRGKK 120 KHVKSKEANT QSTQGKMQEY PAETVSNQEV ATKTALDSWI EEMQDLLSPP TMNNMPFLED 180 EPFIPILDDI VLLEAFTSTG KETWNEIQPF L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-22	12	113	7	107	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269\|PubMed:24803498}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269\|PubMed:24803498}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g008010.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin (IAA). {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ804996	4e-06	Solanum lycopersicum cultivar Micro-Tom ADH1 mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242766.1	1e-156	transcription factor MYB82
Swissprot	Q9LTF7	2e-60	MYB82_ARATH; Transcription factor MYB82
TrEMBL	A0A3Q7H7Q8	1e-155	A0A3Q7H7Q8_SOLLC; Uncharacterized protein
STRING	Solyc07g008010.2.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	1e-62	myb domain protein 82

Link Out ? help Back to Top
Phytozome	Solyc07g008010.2.1
Entrez Gene	101268880

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]