PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 256aa MW: 29491.7 Da PI: 4.9637

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g083900.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll++++k+ G ++W++ ++ g+ R++k+c++rw +yl Solyc06g083900.2.1 14 RGPWSKEEDYLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	43.6	6.6e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T +E++ ++++++ lG+ W++Ia++++ gRt++++k+ w++ Solyc06g083900.2.1 67 RGNFTHQEEDTIIKLHQVLGNS-WSAIAARLP-GRTDNEIKNIWHT 110 89****************99.*****.*******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.745	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.43E-9	16	61	No hit	No description
PROSITE profile	PS51294	22.934	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	115	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-12	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-13	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	5.51E-7	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGRSPCCEKL GLKRGPWSKE EDYLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT DNEIKNIWHT RLKKKRNESQ 120 LKETQSEPEN TNVDVHLEEA NNSNDKHSEI SNLKINIEIQ QQPSPSSSVS SSSEDSCSNT 180 TATSSESRNQ IMSDNLLEID DDIWSEVVWA QVDDNYVDLS LMEDNYHINS SFDDNWFWDD 240 LFTRSNELML ELPEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	12	115	5	107	B-MYB
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10513	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. Expressed in shoot apex, axillary buds, at the basis of flowers and branching points of inflorescences. {ECO:0000269\|PubMed:9681014}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269\|PubMed:16861809, ECO:0000269\|PubMed:9681014}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g083900.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269\|PubMed:9681014}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242359.1	0.0	transcription factor MYB13-like
Swissprot	Q9LNC9	6e-73	MYB13_ARATH; Transcription factor MYB13
TrEMBL	A0A3Q7H5K6	0.0	A0A3Q7H5K6_SOLLC; Uncharacterized protein
STRING	Solyc06g083900.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-72	myb domain protein 13

Link Out ? help Back to Top
Phytozome	Solyc06g083900.2.1
Entrez Gene	101260654

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156]