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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g083430.1.1 |
Common Name | LOC101248117 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
Trihelix |
Protein Properties |
Length: 326aa MW: 37625.6 Da PI: 6.5327 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g083430.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 59.7 | 7.2e-19 | 40 | 122 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
Wt+qe+ Li+a++e++ +l++g+lk+ +Weev++ + ++ gf ++s++qC++k+e+l+kry++++ ++++yfd ++
Solyc06g083430.1.1 40 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 122
***********************************9966667766579*****************98766664......3599999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MATPSSPPPL LLPPPESNQP QISPNPPIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK 60 KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR KRYRAERLKP YPNSWQYFDL 120 MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR 180 GEMGMMGVNV VADNRNVNRM VKDRNFDPMR GMRNSMNEKR KGYFENVGIN NDDDDVEEEA 240 DEEEDDVDGE GSVGGSELAA EIRGFAERFM RMESKKIEMM KETERFRMEM EKRRMEMILE 300 TQRNLIDTIN SVVGSHKKVK VAHEF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC240868 | 5e-10 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-35c8 map 1, complete sequence |
GenBank | AC246175 | 5e-10 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34o13 map 1, complete sequence |