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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g082590.1.1 |
Common Name | PTI6, SlCRF1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 249aa MW: 27912.9 Da PI: 4.7271 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g082590.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.8 | 8.7e-21 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g
Solyc06g082590.1.1 96 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAVVYDKAAVKLKG 146
59********.**********84....35************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006952 | Biological Process | defense response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MTENSVPVIK FTQHIVTTNK HVFSEHNEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR 60 RVKRHVTEIN LMPSTKSIGD RKRRSVSPDS DVTRRKKFRG VRQRPWGRWA AEIRDPTRGK 120 RVWLGTYDTP EEAAVVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS 180 ENDVALSPTS VLCDNDFAPF DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGDEFGEFDF 240 DDFALEAR*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 81 | 96 | KRRSVSPDSDVTRRKK |
Functional Description ? help
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Source |
Description |
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Function -- GeneRIF ? help
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- This study provides a clear picture of SlCRF1 and SlCRF2 expression patterns across tissues during development and in response to cytokinin and specific stresses indicating their importance in plant growth and environmental responses.[SlCRF1]
[PMID: 24081612]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU164419 | 4e-59 | Solanum lycopersicum DNA-binding protein Pti6 gene, promoter and partial cds |
Publications
? help Back to Top |
- Gu YQ, et al.
Tomato transcription factors pti4, pti5, and pti6 activate defense responses when expressed in Arabidopsis. Plant Cell, 2002. 14(4): p. 817-31 [PMID:11971137] - Shi X,Gupta S,Rashotte AM
Characterization of two tomato AP2/ERF genes, SlCRF1 and SlCRF2 in hormone and stress responses. Plant Cell Rep., 2014. 33(1): p. 35-45 [PMID:24081612] - Zhou J,Tang X,Martin GB
The Pto kinase conferring resistance to tomato bacterial speck disease interacts with proteins that bind a cis-element of pathogenesis-related genes. EMBO J., 1997. 16(11): p. 3207-18 [PMID:9214637]
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