PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g082530.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 654aa    MW: 74443.3 Da    PI: 6.1883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g082530.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.43.5e-1082786492374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cAea +s +++   ++L++++e++sp gd++ Rla +f++AL+ar a+ ++++   +++++    + ++ l+a++++  ++P+ +
  Solyc06g082530.1.1 278 TSLLTRCAEAAASYNTKTFIEVLNKIREHSSPFGDATSRLAYCFANALEARFAG-GDTTW--ITSKKI---SAADFLKAYQVYITACPFKR 362
                         689***************************************************.33222..333333...4899**************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +s++ aN+ I + +++++rvHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g   +e++eetg+rL++++++++vpfe+++ 
  Solyc06g082530.1.1 363 MSNIFANKSIAKLTSESSRVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLKEYCKRFDVPFEYKA- 452
                         ************************************************************9*****************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         +ak+++++++e+L+++++E ++Vn+ ++l+++lde+v++++    +rd+vL+l+k+++P+ +v+   +a +n++ F +rf eal ++s+ f
  Solyc06g082530.1.1 453 IAKKWDEIKVEDLDIDRDEIVVVNCLYRLKNVLDETVEVTHnnknPRDAVLNLIKEINPHYFVHGIVNAMYNASFFTTRFREALFHFSSQF 543
                         7*********************************999876666679********************************************* PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         d++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW++r + aGF+++pl+++++k++k+ +++++   + v+e+s++++
  Solyc06g082530.1.1 544 DMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSMRNQIAGFRQLPLDQDIVKEVKTKVKMFYHGDFLVDEDSNWML 634
                         *****************************************************************************666*********** PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         +gWk+r ++++S+W+
  Solyc06g082530.1.1 635 QGWKGRIMYALSVWE 649
                         **************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.908251629IPR005202Transcription factor GRAS
PfamPF035141.2E-105278649IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MNTSSHFPGD HRSSDGFEFG HCCGGGGDND VVCFSSRRSS EEEVVIGSGS DRTVVQGDYF  60
DGVFKYIHQM LMEDQEDLEN RPCMFQDCIA LQAAEKSFYD ALNPPTIHRD FVDDSGNQFQ  120
DDYCDAVNHQ FAETTFNSDL DNDQFSFFYN TNTICHGVGD GISVVNGDTS NAINYHQKGE  180
NENKKHTRDE NSESSKGRKS KQLASNGTED GKTEEHYDKA LLCPGLNPSF YENRSKSATA  240
WDNAAWDKQK SSHIKQSKRG RPRGSKKGVK TNEVVDLTSL LTRCAEAAAS YNTKTFIEVL  300
NKIREHSSPF GDATSRLAYC FANALEARFA GGDTTWITSK KISAADFLKA YQVYITACPF  360
KRMSNIFANK SIAKLTSESS RVHIIDFGIL YGFQWPCIIH GISLRPGGPP KLKITGIDFP  420
QPGFRPAERV EETGRRLKEY CKRFDVPFEY KAIAKKWDEI KVEDLDIDRD EIVVVNCLYR  480
LKNVLDETVE VTHNNKNPRD AVLNLIKEIN PHYFVHGIVN AMYNASFFTT RFREALFHFS  540
SQFDMFEATM PREDEGRMMF EQEVFGRDIM NVIASEGAER VERPESYKKW SMRNQIAGFR  600
QLPLDQDIVK EVKTKVKMFY HGDFLVDEDS NWMLQGWKGR IMYALSVWEP IHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-462776485374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g082530.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242547.20.0scarecrow-like protein 9
SwissprotQ9XE581e-161SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3Q7H1810.0A0A3Q7H181_SOLLC; Uncharacterized protein
STRINGSolyc06g082530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-163SCARECROW-like 14
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]