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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g082430.1.1 | ||||||||
Common Name | LOC101247628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25269.7 Da PI: 8.7169 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.1 | 4.7e-41 | 50 | 149 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ Solyc06g082430.1.1 50 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQIQNLQ 140 7****************************************************************************************** PP DUF260 92 aelallkee 100 +el+++++e Solyc06g082430.1.1 141 VELNTIRAE 149 ****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.189 | 49 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-41 | 50 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSRERERLDE MGKKLKTEID ISQLQMQQQM GRRHVLGPVG GGTTLNNVTP CAACKLLRRR 60 CAEECPFSPY FSPHEPHKFA AVHKVFGASN VSKLLMEVPV GQRADAANSL VYEANVRLRD 120 PVYGCMGAIS TLQQQIQNLQ VELNTIRAEI LRYKYREAAN SLIASISTSV PPELPQAPPT 180 PPPPPPPPSV VVVSSSSSSA SSTSSNLYTP ASSSVANFSA ITNNNISYFD QQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-45 | 43 | 171 | 4 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-45 | 43 | 171 | 4 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g082430.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242489.1 | 1e-171 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 7e-75 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-74 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3Q7H202 | 1e-170 | A0A3Q7H202_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082430.1.1 | 1e-170 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-77 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g082430.1.1 |
Entrez Gene | 101247628 |
Publications ? help Back to Top | |||
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