PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g082010.2.1 | ||||||||
Common Name | LOC101257277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 700aa MW: 76302.7 Da PI: 6.2084 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 283 | 303 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd+C +aHg Solyc06g082010.2.1 283 PCPDFRK-GTCQRGDSCEYAHG 303 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 5.91E-16 | 38 | 166 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.7E-17 | 44 | 184 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.5E-9 | 82 | 155 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.012 | 86 | 116 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.008 | 86 | 164 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.74E-14 | 88 | 183 | No hit | No description |
SMART | SM00248 | 0.0058 | 121 | 153 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.167 | 121 | 156 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-5 | 278 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 283 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 283 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 283 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 311 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.005 | 313 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 63 | 313 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MQELREVQTL FMCSGSGSEV CSTELAMEGK IQKQKELVPD FSLLLELSAS DDIRNFQKAV 60 EEEGHDINEV GLWYVRRVGV KKMGYEERTP LMVAATFGSK QVLSYMLEKG CVDVNQACGS 120 DRATALHCAI SGGSAALLEV VKLLVDASAD VNLVDSNGKR AVDLISGQSC CLNSRRKILE 180 HLLGGSSTDE VIDQIISEQA EEQLLLTPTV SKFGIEKKEY PVDPSLPDIK NGIYGTDDFR 240 MYIFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPSKYHYS CVPCPDFRKG TCQRGDSCEY 300 AHGIFECWLH PAQYRTRMCK DETNCNRRVC FFAHKPEELR PLYPSTGSAV LSPRSYSSGA 360 SSLDITSITP LALGSPSVMV PPTSTPPMSP SAGASSVGGS LWTCQSSPAT PTLQLPISRL 420 KTAINARDMD IGNGYLMQDQ LMDELSALSS PSRWNSSSAK AAAFAASLND RNGEFSRHGG 480 LNPSNLDDII ANLDAKILSQ LQGLSLDAAS PQLQSPKGMQ MRQNMNQQHM SSYSSSQSSP 540 SFRTSSSYGI DPSNAAATAV LSSRAAAFAK RSQSFIDRSG AGRLPNASAV PSNLSGWGSP 600 DGKLDWGIQK EELNKLRKSA SFGLRSSGSR FPTTSESSVS DSLVEPDVSW VQSPHSPSMT 660 SRQLATMEDQ QYRLNTSRGS ETMPTWVDQL YMEQEQIVH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14638 | 0.0 | flower| fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g082010.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242521.1 | 0.0 | zinc finger CCCH domain-containing protein 66 isoform X1 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A3Q7H1T7 | 0.0 | A0A3Q7H1T7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g082010.2.1 |
Entrez Gene | 101257277 |
Publications ? help Back to Top | |||
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