PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076840.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 432aa    MW: 48805.8 Da    PI: 6.7034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16119165148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Solyc06g076840.1.1 119 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARAGKQCRERWHNHL 165
                         799*****************************.*************97 PP
2Myb_DNA-binding55.51.3e-17171213145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt++ +k++w+
  Solyc06g076840.1.1 171 KDTWSEEEELLLVESHKQLGNK-WAEIAKRIP-GRTENAIKNHWN 213
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.161114169IPR017930Myb domain
SuperFamilySSF466893.59E-29118212IPR009057Homeodomain-like
SMARTSM007175.2E-15118167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-26120172IPR009057Homeodomain-like
CDDcd001672.42E-15122165No hitNo description
PfamPF139211.4E-19122181No hitNo description
PROSITE profilePS5129419.835170220IPR017930Myb domain
SMARTSM007172.3E-16170218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-20173218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGESAFLPY QNLSKNHPPP LTAIDRFLLS HENYFPQQKN NNENVFSDFS HHFVGGNASF  60
SSHANGISWP NLPEPSVMEG FYMNEIQENN GLFDHEKNKV KESGKKVKEG NSSTNYLIKG  120
QWTDEEDRKL LRLVKQFGVR KWAQIAEKME ARAGKQCRER WHNHLRPDIK KDTWSEEEEL  180
LLVESHKQLG NKWAEIAKRI PGRTENAIKN HWNATKRRQN SRRNKNKKIQ QAGDDDTQCE  240
RKSSSSRSTV LQDYIKSKYF MSDDNSPPTA TAFNGGTYSG GGCSSTATTF TGSTPPYSED  300
DSPSLMTHQT HDEEMNFMQS LFGHDNINTI EPQVVTQDLL NKSSSDLNSF SKNSLTPCNV  360
QSYTPQYYPP DLYLSYLLDG SNYFGCGSMN NTNQGCSTSG GGNIKEVDLM EMINSTNSQL  420
SQAGTFNKNF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-431172192104C-Myb DNA-Binding Domain
1msf_C1e-431172192104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076840.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322952.20.0transcription factor MYB119
TrEMBLA0A1U8GYC30.0A0A1U8GYC3_CAPAN; transcription factor MYB51-like
STRINGSolyc06g076840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-53myb domain protein 119
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]