PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076820.1.1
Common NameLOC101259160
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 381aa    MW: 42715.5 Da    PI: 8.0962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06144167123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ Cg++F ++ +L++H++  H
  Solyc06g076820.1.1 144 YPCTLCGEVFQSPIHLEQHQSIkH 167
                         99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.076144168IPR007087Zinc finger, C2H2
SMARTSM003550.0026144167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.0E-5169284IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563998.06E-13169379No hitNo description
Gene3DG3DSA:3.90.228.101.8E-4315379IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAAPTLFRPI FSNFLSLLFL LLHLGCFVFS PSSSSSQNHS SKKRKHSSNL NSSPPPPSTR  60
LKSSTTNAIS SSWSYIKRIF SSNKQKINNT QTHNNPSIQS PCSSTRSLQK PISSDDLINR  120
SVSPIPESEI TSDQLFFPLR NDIYPCTLCG EVFQSPIHLE QHQSIKHAIS ELTDEDSGNN  180
IVRIIFQTGW VDKEKNPVIN RILKIHNSKR ILSRFEEYRE CVKLKASRNA AVKRDERCIA  240
DGNEVLRFHC TTFICELGQN GNSSLCTQQY CSVCGIIKSG FSHKMDGISM QPNSWRGHVS  300
VPEEIEEEFG FMNVKRAMLV CRVIAGRVGC DPGYVDKEDS GFDSLVGREN GSHMRLDEED  360
ELLVFNSRAV LPCFVIVYTV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.161280.0floral bud| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076820.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241174.10.0uncharacterized protein LOC101259160
TrEMBLA0A3Q7H4H90.0A0A3Q7H4H9_SOLLC; Uncharacterized protein
STRINGSolyc06g076820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]