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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc06g075510.2.1 |
| Common Name | LOC100736535 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
AP2 |
| Protein Properties |
Length: 475aa MW: 52534.1 Da PI: 7.9137 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g075510.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.2 | 7.2e-17 | 151 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Solyc06g075510.2.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 200
78*******************......55************************997 PP
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| 2 | AP2 | 39.3 | 1.6e-12 | 243 | 291 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k
Solyc06g075510.2.1 243 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 291
79********.7******5553..2.26**********99**********886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MLDLNVSVIY NNDLPQVSLL DESATSNSSL RNAEATTSAG DEDSCAGELF AFNFGILKVE 60
GAETSRSSNN DDEEGYGKNQ RVTHSQFVTR QLFPVDDGEL NRKQTDRVIL SSARSGTSIG 120
FGDVRIIQQQ QTEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180
FDTAHTAARA YDRAAIKFRG VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR 240
GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK TSGREAVTNF 300
EPSSYEGETM SLPQSEGSQH DLDLNLGIST TSSKENDRLG GSRYHPYDMQ DATKPKMDKP 360
GSVIVGSSHL KGLPMSSQQA QLWTGIYSNF SSSYEGRAYD KRKDTGSSQG PPNWALQMPS 420
QVDTNSPLTM FCTAASSGFF IPSTTSITSS TSALATSTNA SQCFYQINPR LPLP*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ586954 | 0.0 | Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Karlova R, et al.
Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.
Plant Cell, 2011. 23(3): p. 923-41
[PMID:21398570] - Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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