PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 243aa MW: 27933.1 Da PI: 8.7836

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g075330.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.4e-31	95	178	17	100
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 vlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Solyc06g075330.1.1 95 VLAPYFPPSEPIKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQLAKTQAE 178 89******************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.238	78	179	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-30	95	176	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MLSTNEGIRL IGHLATSSRH FDHQFSVIII IIIMFFDHLF LLIFRWSPTK RRSPPQHRRL 60 PALYCRQLTL HLHRGWWPHL VLPVRYYEGD ARRNVLAPYF PPSEPIKFTI AHRVFGASNI 120 IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ LQKQVNELQA QLAKTQAELV 180 NIQCQQANLM AFVYMEMGPS PPTSPQQSLD KFTNSTTHDT IQNNMSFLDE NNSYGTLETL 240 WT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-30	95	186	27	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-30	95	186	27	118	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g075330.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079078.1	1e-105	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-50	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	6e-50	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	M1AC13	1e-102	M1AC13_SOLTU; Uncharacterized protein
STRING	Solyc06g075330.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-53	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Solyc06g075330.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]