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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g074360.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 24611.8 Da PI: 7.0986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.9e-06 | 153 | 172 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Solyc06g074360.2.1 153 FACNICNKTFNRYNNMQMHM 172 78*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.77E-6 | 144 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 153 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.783 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 1.5E-4 | 153 | 172 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGIRNMNFHV HQDNMDVCFD QTPNFIEWLK PSSNNSSPSS SSSTIMNTFL KLPQLYNPQD 60 QIQCLPLLSK LSDPKTEKEE EDYQVKEENM EKVRVSLHIG LPDVDETKPF SYNKKEENKE 120 KYSTIINKGC NFNSESRFWI PTPAQILVGP MQFACNICNK TFNRYNNMQM HMWGHGSEYR 180 KGPESLRGTQ PPWQLLSNKK ISRREGFVEE H* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24356 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g074360.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241317.1 | 1e-140 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 2e-40 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A3Q7GZU7 | 1e-139 | A0A3Q7GZU7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g074360.2.1 | 1e-157 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 4e-33 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g074360.2.1 |
Publications ? help Back to Top | |||
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