PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g074320.2.1

Common Name

LOC101251993

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 502aa MW: 55600.1 Da PI: 7.0323

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g074320.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	1e-09	198	236	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAA++sR RKka++++Le+ L++ + Solyc06g074320.2.1 198 KTLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 236 6789************************86655555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-5	192	271	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.1E-7	196	240	No hit	No description
PROSITE profile	PS50217	9.059	196	240	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.1E-8	196	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	198	240	No hit	No description
CDD	cd14708	3.70E-20	198	250	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-32	279	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MASQGIGETG LTDSGSSHHN HNMPYAVYRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE 60 AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS 120 LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNNNPRTGV LQTELSSKSN 180 SEKKKGAAST SERVLDPKTL RRLAQNREAA KKSRIRKKAY VQQLETSRIR LSQLEQELQR 240 ASSQGIFLGG GTAAGSNISS GAAIFDMEYS RWLDDDHRHI AELRTALQAH LSDGDLRLIV 300 DGYLAHYDEI FSLKGVAAKS DVFHLITGTW TTPAERCFLW MGGFRPSELI KMLIGQLDPL 360 TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA SLHDGMHHMA LALGKLSNLE 420 GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIADDN 480 SCQTITGLQM VQSSQNHFSN F*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MASQGIGETG LTDSGSSHHN HNMPYAVYRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE  60
AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS  120
LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNNNPRTGV LQTELSSKSN  180
SEKKKGAAST SERVLDPKTL RRLAQNREAA KKSRIRKKAY VQQLETSRIR LSQLEQELQR  240
ASSQGIFLGG GTAAGSNISS GAAIFDMEYS RWLDDDHRHI AELRTALQAH LSDGDLRLIV  300
DGYLAHYDEI FSLKGVAAKS DVFHLITGTW TTPAERCFLW MGGFRPSELI KMLIGQLDPL  360
TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA SLHDGMHHMA LALGKLSNLE  420
GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIADDN  480
SCQTITGLQM VQSSQNHFSN F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g074320.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241320.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3Q7H0D9	0.0	A0A3Q7H0D9_SOLLC; Uncharacterized protein
STRING	Solyc06g074320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40
Representative plant	OGRP6496	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-170	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc06g074320.2.1
Entrez Gene	101251993

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]