PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g074120.2.1 | ||||||||
Common Name | BL2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 700aa MW: 77662.4 Da PI: 7.3771 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 424 | 461 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Solyc06g074120.2.1 424 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 461 554459******************************88 PP | |||||||
2 | BELL | 120.1 | 9.6e-39 | 288 | 359 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakLl +leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai+eq+ Solyc06g074120.2.1 288 QRQELQMKKAKLLAMLEEVEQRYRQYHHQMQIIVSSFEQVAGVGSAKSYTQLALHAISKQFRCLKDAISEQV 359 69********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-58 | 211 | 357 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-48 | 213 | 356 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 402 | 465 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-10 | 405 | 469 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.10E-12 | 405 | 466 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 406 | 471 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-29 | 408 | 471 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 422 | 461 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MYYQGTSDNN IQADHHQQQH NNLGNSNNNI QTLYLMNPNS YMQGYTTTDT QQHLQQQQNQ 60 HQLLFLNSAP AGGNALSHAN IQHAPLQQQH FVGVPLPAVS LHDQINHHGL LQRMWNNQDQ 120 SQQVIVPSST VVSATSCGGT TTDLASQLAF QRPIVVSPTP QHRQQQQQQG GLSLSLSPQQ 180 QQQISFNNNI SSSSPRTNNV TIRGTMDGCS SNMILGSKYL KAAQELLDEV VNIVGKSNKG 240 DDQKKDNSMN KELIPLVSDV NTNSSGGGGG ESSSRQKNEV AIELTTAQRQ ELQMKKAKLL 300 AMLEEVEQRY RQYHHQMQII VSSFEQVAGV GSAKSYTQLA LHAISKQFRC LKDAISEQVK 360 ATSKSLGEDE GLGGKIEGSR LKFVDHHLRQ QRALQQLGMM QPNAWRPQRG LPERAVSVLR 420 AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEVKNQEQ 480 NSSNTSGDNK NKETNISAPN EEKQPIITSS LLQDGTTQAE ISTSTISTSP TAGASLHHAH 540 NFSFLGSFNM ENTTTTVDHI ENNAKKPRNH DMHKFSPSSI LSSVEMEAKA RESTNKGFTN 600 PLMAAYAMGD FGRFDPHDQQ MTANFHGNNG VSLTLGLPPS ENLAMPVSQQ NYLSNELGSR 660 PEIGSHYNRM GYENIDFQSG NKRFPTQLLP DFVTGNLGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-16 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-16 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2858 | 0.0 | callus| flower| fruit| leaf| trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g074120.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013459 | 0.0 | Lycopersicon esculentum clone 132117F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234599.1 | 0.0 | bell-like homeodomain protein 2 | ||||
Refseq | NP_001303282.1 | 0.0 | bell-like homeodomain protein 2 | ||||
TrEMBL | Q7Y0Z7 | 0.0 | Q7Y0Z7_SOLLC; Bell-like homeodomain protein 2 | ||||
STRING | Solyc06g074120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 8e-96 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g074120.2.1 |
Entrez Gene | 543693 |
Publications ? help Back to Top | |||
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