PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g073980.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21098.5 Da PI: 8.8778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.1e-12 | 91 | 182 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +++++l+++rl lp +f + + + k+++ + tl++ ++ sW++ ++ +r l++G ++F ++n L+++D++ Fkl+++++ l+v Solyc06g073980.2.1 91 IVIKASHLNRARLNLPAPFGNCYLKRKKRPLMATLRT-DSGSWTIVP---QYYDRLELREGIQKFIDDNALRVNDVCRFKLIDDEKLILKV 177 567899999***********88866667887777666.7779***99...3445677*************************999998888 PP EEE-S CS B3 95 kvfrk 99 ++ r+ Solyc06g073980.2.1 178 RIKRQ 182 88775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-12 | 85 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-11 | 85 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.811 | 88 | 183 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-8 | 88 | 181 | No hit | No description |
SMART | SM01019 | 7.3E-8 | 89 | 183 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-9 | 91 | 182 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVTPVEHVSI PHDLPEFFKI FHPEICYPQL FYVKIYGKNG CLKEDVTALK EPELLPLVEE 60 KARGKSIVAE PADQTDNGSG DMASSVTSFE IVIKASHLNR ARLNLPAPFG NCYLKRKKRP 120 LMATLRTDSG SWTIVPQYYD RLELREGIQK FIDDNALRVN DVCRFKLIDD EKLILKVRIK 180 RQPK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | LKRKKRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11920 | 2e-44 | flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g073980.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322448.1 | 1e-135 | uncharacterized protein LOC101259943 isoform X2 | ||||
TrEMBL | M1A5L9 | 1e-105 | M1A5L9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g073980.2.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Representative plant | OGRP16287 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g073980.2.1 |
Publications ? help Back to Top | |||
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