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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc06g073920.2.1 |
| Common Name | LOC101262319 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
YABBY |
| Protein Properties |
Length: 193aa MW: 21347.1 Da PI: 8.6049 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g073920.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 232 | 1.4e-71 | 9 | 165 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
ssse+vCyv+CnfC+tilavsvP +s++++vtvrCGhC++llsvn+a + q l+ ++ l+++ + ++ + + + + ++++s+++
Solyc06g073920.2.1 9 SSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQD-LQRQNESSIEDGM------SRGYGSSSSSTNS 92
5799****************************************************99.5554444443333......2333444444444 PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ + +++ d++ pr pp ir PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
Solyc06g073920.2.1 93 FHRFSPIPT--DHDQPRSPP-IRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165
455555555..556688888.9****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0010158 | Biological Process | abaxial cell fate specification |
| Sequence ? help Back to Top |
| Protein Sequence Length: 193 aa
Download sequence Send
to blast |
MSLDMTYSSS SSERVCYVHC NFCSTILAVS VPCNSMMTIV TVRCGHCANL LSVNIAPSLQ 60
SLPIQDLQRQ NESSIEDGMS RGYGSSSSST NSFHRFSPIP TDHDQPRSPP IRVPEKRQRV 120
PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQTNKLDHAV 180
AGEGPQKTIG LY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC219219 | 1e-70 | Solanum lycopersicum chromosome 6 clone C06SLe0131F12, complete sequence |
| GenBank | AC232857 | 1e-70 | Solanum lycopersicum chromosome 6 clone C06HBa0055E14, complete sequence |
