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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g073200.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 126aa MW: 14981.2 Da PI: 10.3002 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.8e-14 | 5 | 48 | 48 | 91 |
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +ek r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Solyc06g073200.2.1 5 REKIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLCP 48 367889************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-11 | 6 | 48 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MPDKREKIVR QRAETRVGCR AMILVRKISS GKWVVTKFVK EHSHPLCPGK GRRDLIYDQY 60 PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ SLSKKIQDIV HNVRELESRD 120 EHHHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g073200.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241418.1 | 1e-87 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_015077850.1 | 1e-87 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0V0HLI0 | 8e-86 | A0A0V0HLI0_SOLCH; Uncharacterized protein | ||||
TrEMBL | M1CKJ5 | 8e-86 | M1CKJ5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g073200.2.1 | 1e-87 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400069495 | 1e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11568 | 23 | 25 |
Representative plant | OGRP10299 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 9e-66 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g073200.2.1 |
Publications ? help Back to Top | |||
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