 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc06g072750.2.1 |
Common Name | LOC101246442 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
HSF |
Protein Properties |
Length: 483aa MW: 54336 Da PI: 5.1769 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g072750.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.9 | 2.1e-35 | 22 | 114 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d++++ ++sws+++nsfvv++ ef+++vLpkyFkh+nf+SFvRQLn+Yg+kkv+ + weF+++ F +g+k+
Solyc06g072750.2.1 22 FLSKTYDMVDDRSTDAVVSWSKSNNSFVVWNVPEFSRDVLPKYFKHNNFSSFVRQLNIYGYKKVDPDC---------WEFANEGFLRGQKH 103
9***************************************************************9987.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i r+k +
Solyc06g072750.2.1 104 LLKTISRRKPS 114
********976 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 483 aa
Download sequence Send
to blast |
MSPDGEKTKG GVHEIGNSVP PFLSKTYDMV DDRSTDAVVS WSKSNNSFVV WNVPEFSRDV 60 LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG QKHLLKTISR RKPSQMQVHQ 120 ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR 180 LQLMEQREQQ AMTFLAKALQ SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ 240 VSTLRDRQIV RYQPLMNEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET 300 GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL 360 NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY IETMQDIVDD VTSIIPDGFS 420 MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LDDGLSKEED VPEVQESDCD 480 KL*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC211039 | 0.0 | Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence |
GenBank | AC219227 | 0.0 | Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence |