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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g072040.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
NF-YC |
Protein Properties |
Length: 233aa MW: 25372.5 Da PI: 5.0222 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g072040.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 179.3 | 3.6e-56 | 44 | 148 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdi
Solyc06g072040.1.1 44 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDI 134
89*****998899****************************************************************************** PP
NF-YC 89 fdflvdivprdelk 102
fdflvdivprde+k
Solyc06g072040.1.1 135 FDFLVDIVPRDEIK 148
***********975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MDNNPHQSPT EAAAAAAAAA AAAQSATYPS QTPYHHLLQQ QQQQLQMFWT YQRQEIEQVN 60 DFKNHQLPLA RIKKIMKADE DVRMISAEAP VLFAKACELF ILELTIRSWL HAEENKRRTL 120 QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE GVGLGPGIVG STASGVPYYY PPMGQPAPGG 180 VMLGRPAVPG VDPSMYVHPP PSQAWQSVWQ TGDDNSYASG GSSGQGNLDG QM*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Les.14395 | 0.0 | callus| flower| fruit| leaf| root| seed| stem| trichome |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help
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Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY490243 | 0.0 | Lycopersicon esculentum CONSTANS interacting protein 2a (CIP2a) mRNA, complete cds |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Shi H,Chan ZL
AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] - Shi H,Chan ZL
AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]
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