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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g071860.2.1 |
Common Name | LOC101256388 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 606aa MW: 67030.7 Da PI: 4.6624 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g071860.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.5 | 2e-12 | 259 | 281 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
+ C ++++tGtC+yG +CkF+H+
Solyc06g071860.2.1 259 VDCAYYMKTGTCQYGLNCKFNHP 281
68********************8 PP
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2 | zf-CCCH | 28.6 | 2.4e-09 | 308 | 330 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C++++ G CkyG+ Ck++H++
Solyc06g071860.2.1 308 ECKYYLTEGGCKYGNACKYSHSK 330
6********************95 PP
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3 | zf-CCCH | 40.1 | 6e-13 | 351 | 375 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C+f++rtG CkyG++C+F+H+
Solyc06g071860.2.1 351 GEKDCPFYMRTGSCKYGSSCRFHHP 375
6789********************9 PP
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4 | zf-CCCH | 24.7 | 4.1e-08 | 487 | 513 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++f +tG Cky + CkF+H++
Solyc06g071860.2.1 487 PGQPDCSYFIKTGDCKYKSYCKFHHPK 513
5789*********************96 PP
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5 | zf-CCCH | 37.9 | 3.1e-12 | 535 | 560 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C+f++r+G+CkyG+ CkF H++
Solyc06g071860.2.1 535 GQAVCSFYSRYGICKYGPACKFDHPE 560
7899********************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.76 | 255 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-10 | 259 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 261 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.497 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 308 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-5 | 309 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-7 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.37 | 349 | 377 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 351 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 351 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 355 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.634 | 486 | 514 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0076 | 486 | 513 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 488 | 513 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 531 | 558 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 533 | 560 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 533 | 561 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 535 | 560 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 538 | 561 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 606 aa
Download sequence Send
to blast |
MEAIQSPYMH NLSQPTLDKQ YLGFDPQPPD TASFSSEPNF QNPSRDLPEV EEDEFDDDDE 60 IALQIIFKEV QNLVLNQAFS EARAKGGVYE SAMVKSGSED EKDVRMIGEE LQNLVVDQAF 120 SEERAKGDIN EGNGREEVGN EYGGNRYEDG AGWSENVNVI DVKNEKGGEV ISREWGFDND 180 EDGDYSWSES GIVVDVENEK AGDAGSKEWG FDDYEDGDLS WTGNEIDVVN ESGSMAGSKE 240 WGFNANGRRL SYPLRPDAVD CAYYMKTGTC QYGLNCKFNH PSRRQNQQWA MEKGKQKDES 300 EERAGLIECK YYLTEGGCKY GNACKYSHSK GKGAISPVLD FNFLGLPIRQ GEKDCPFYMR 360 TGSCKYGSSC RFHHPDPSTV TGNNPSLGYN NGGSAPVQSA SYSPVSSWSS PRASNETSPF 420 VPVVYSANQG ILPLSPEWNR FQAPVYPTSE KSLPTPPAFT VKDPATKTNI YSRPQPPWLV 480 EEYPERPGQP DCSYFIKTGD CKYKSYCKFH HPKTQKSLTN PPSVLNDKGL PLRPGQAVCS 540 FYSRYGICKY GPACKFDHPE HIDNAPASSP RPAFYQPPFG ISSASDGLRM ARKGNGSGSL 600 VHQSV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC226020 | 0.0 | Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence |