PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 322aa MW: 37050.6 Da PI: 7.6796

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g071690.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Solyc06g071690.2.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	47.6	3.8e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++ ++k lG++ W+ Ia++++ gRt++++k++w++ Solyc06g071690.2.1 67 RGMFSQEEEDMIITLHKVLGNR-WAQIAAKLP-GRTDNEIKNFWNSN 111 788*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-23	9	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.25	9	61	IPR017930	Myb domain
SMART	SM00717	4.7E-12	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.49E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	8.6E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-10	17	61	No hit	No description
PROSITE profile	PS51294	24.438	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.13E-11	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGRHSVFVKE KTRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQEEEDMIIT LHKVLGNRWA QIAAKLPGRT DNEIKNFWNS NLKRKLIKQG 120 IDPNTHKPLS ENHQVRNEPN CTDKTSSLLM PKLPNMSDSA EIQQPFHFFN SKRNFNSQAV 180 TRELTEVSKN QLVSKQVFDP LFLYEFQASV NPIGPYAHHH NQIEGNQDFG FCSNFQHVHM 240 TTESDISDSS TSRMSTSNSS NTMISHYNSV GIQMNEMLEW DADNKIDSLI QYPYVGIKNE 300 ENYSNNNNTL SGENLDVFHH I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-29	14	116	7	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g071690.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209513	1e-19	Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241532.1	0.0	transcription factor MYB86-like
TrEMBL	A0A3Q7GZ07	0.0	A0A3Q7GZ07_SOLLC; Uncharacterized protein
STRING	Solyc06g071690.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	1e-75	myb domain protein 86

Link Out ? help Back to Top
Phytozome	Solyc06g071690.2.1
Entrez Gene	101264528

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]