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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g071520.1.1 | ||||||||
Common Name | LOC101255008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 426aa MW: 49109 Da PI: 6.5768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 155 | 201 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v ++G + W+ Ia+++ gR +kqc++rw+++l Solyc06g071520.1.1 155 KGQWTIEEDRLLIHLVDKFGVRKWSQIAQMLK-GRIGKQCRERWHNHL 201 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 208 | 249 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ Solyc06g071520.1.1 208 DFWTEEEDRILIQAHGEVGNK-WAEIAKRLP-GRTENSIKNHWN 249 67*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.516 | 150 | 205 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-15 | 154 | 203 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 155 | 201 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-31 | 155 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 156 | 209 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-13 | 158 | 201 | No hit | No description |
SMART | SM00717 | 2.6E-17 | 206 | 254 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.239 | 206 | 256 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.9E-16 | 210 | 249 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 210 | 255 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.59E-13 | 210 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MELDPFFMSN NNMMKQENDD FCIDSKDYLQ DLEHLDHNFS NTFNNFSENF MIDDNTNGTY 60 HDPFDPFSNI QDNFSSLGDF NFINYEVNPF DQENGESSGS KLVMKNNFHV VDGVNVPDDQ 120 SSCVTGDIHH NNLSSSMKKK LGGSRGRPKK SKSSKGQWTI EEDRLLIHLV DKFGVRKWSQ 180 IAQMLKGRIG KQCRERWHNH LRPDIKKDFW TEEEDRILIQ AHGEVGNKWA EIAKRLPGRT 240 ENSIKNHWNA TKRRQFSKRK CRTKWPRPSS LLQNYIKSLN LEKGSTKKSN DTNPNGRVDL 300 IRRVNYPGGS GYTGSIPEKK NENLVNRPNK CHAKVSPKPE AIEFCQGNNN IGDFDLSEVP 360 EFTLDDNFFM EEINIPHVGS SSIMVNENNY EKCMGMEIMP YYEVPTLMQG EVNKEIDLME 420 MISRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-45 | 155 | 255 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 155 | 255 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g071520.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219210 | 0.0 | Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence | |||
GenBank | AC232944 | 0.0 | Solanum lycopersicum chromosome 6 clone LE_HBa-24A16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242162.1 | 0.0 | transcription factor MYB98-like | ||||
TrEMBL | K4C8M4 | 0.0 | K4C8M4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g071520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-71 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g071520.1.1 |
Entrez Gene | 101255008 |
Publications ? help Back to Top | |||
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