PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 378aa MW: 41783.1 Da PI: 6.2449

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069850.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+ I+ g+ R+ k+c++rw +yl Solyc06g069850.2.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Solyc06g069850.2.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.526	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.28E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-25	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.609	66	116	IPR017930	Myb domain
SMART	SM00717	1.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.21E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MGRPPCCEKS GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNNNK 120 KVEGHDDHQE GTSASSSSSQ SKIIKGQWER RLQTDIHTAK QALCDALSLD TTPNNKNNNN 180 NPPPHDQDQQ PPSVQTPTTY ASSAENIAKL LQNWMKNSPK STSSSSSKIT PMSSLNNNLS 240 IGAVSSSSPS EGTVNVTPGQ GLDSIFSFNS SNNSDVSQSV SVDEGGNFST PENHNNNNNN 300 NAGIYQVESK PNLPDFKPEN GNFQEESKQN METQQVPLTM LEKWLLEDAN AQAEQEDQLM 360 GIGMGMGMTL AETNDLF*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MGRPPCCEKS GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNNNK  120
KVEGHDDHQE GTSASSSSSQ SKIIKGQWER RLQTDIHTAK QALCDALSLD TTPNNKNNNN  180
NPPPHDQDQQ PPSVQTPTTY ASSAENIAKL LQNWMKNSPK STSSSSSKIT PMSSLNNNLS  240
IGAVSSSSPS EGTVNVTPGQ GLDSIFSFNS SNNSDVSQSV SVDEGGNFST PENHNNNNNN  300
NAGIYQVESK PNLPDFKPEN GNFQEESKQN METQQVPLTM LEKWLLEDAN AQAEQEDQLM  360
GIGMGMGMTL AETNDLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-25	14	116	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15193	0.0	callus\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069850.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828678	5e-07	Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241580.1	0.0	myb-related protein 306-like
Swissprot	P81392	1e-119	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A3Q7H0Q5	0.0	A0A3Q7H0Q5_SOLLC; Uncharacterized protein
STRING	Solyc06g069850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	5e-95	myb domain protein 30

Link Out ? help Back to Top
Phytozome	Solyc06g069850.2.1
Entrez Gene	101253907

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]