PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 279aa MW: 30895.1 Da PI: 9.4107

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g069460.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.9	7.8e-30	57	131	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s + + Solyc06g069460.1.1 57 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffS 131 79*************************************************************777763222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-26	58	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.44	58	116	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MNSRKQETGS GVDTNNSKTT STTTATTIPS SSSSRQSSSW GGGFKNPRIV RVSRSFGGKD 60 RHSKVCTVKG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLIDATK DEIDKLPPLQ 120 IPPPSLSHFF STKDHHNLDF VDTGLFGKDR WIATTNDQES SNHLIFQSSN LGMLNTFSNS 180 WEPNSNLSLG PFGNYQDQYQ QQQNMPLIPS SSHHQQQQLY FCPTSSSTTT LSSLVPPYNS 240 HFHPNSIAPT LQLTTSPVKS SFSLQDHHQH NHKEGSGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-19	63	117	1	55	Putative transcription factor PCF6
5zkt_B	2e-19	63	117	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25909	0.0	flower

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g069460.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc06g069460.1, Solyc05g007420.1, Solyc02g089020.1, Solyc02g089830.1, Solyc06g065190.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496324	0.0	Solanum lycopersicum TCP transcription factor 6 (TCP6) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234568.1	0.0	TCP transcription factor 6
TrEMBL	G3BGU6	0.0	G3BGU6_SOLLC; TCP transcription factor 6
STRING	Solyc06g069460.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-42	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Solyc06g069460.1.1
Entrez Gene	100736454

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]