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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g069430.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 246aa MW: 28290 Da PI: 9.5681 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g069430.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.3 | 1.1e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey+
Solyc06g069430.2.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYA 58
79***********************************************8 PP
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2 | K-box | 106.1 | 4.2e-35 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++++ s++ e+akLk+++e Lqr+q+h++GedLesLs+keLq+Le+qL+++lk+iRs+Kn+l++e+i+ lqkk ++lqe+n++L+kk++
Solyc06g069430.2.1 83 TDHTSPVSWTLEHAKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVK 173
56667789*********************************************************************************98 PP
K-box 100 e 100
e
Solyc06g069430.2.1 174 E 174
6 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 3.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.001 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.14E-41 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-29 | 88 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.523 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYAND 60 SCMERILERY ERYSFAEKQL VPTDHTSPVS WTLEHAKLKA RLEVLQRNQK HYVGEDLESL 120 SMKELQNLEH QLDSALKHIR SRKNQLMHES ISVLQKKDRA LQEQNNQLSK KVKEREKEVA 180 QQNQWEINSS SFVLPQQLDS PHLGEAYQST NVIDNGEVEG GSSSQQQGAA NNTVMPQWML 240 RHLNN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}. |
Uniprot | TISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help
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- FUL1 and FUL2 do not regulate ethylene biosynthesis but influence ripening in an ethylene-independent manner. FUL1/2 and TOMATO AGAMOUS-LIKE1 regulate different subsets of the known RIN targets, probably in a protein complex with the latter.
[PMID: 23136376] - Data show that APETALA1/fruitfull (AP1/FUL) MADS box genes AP1, TM4 and MBP7 were involved in tomato leaf development and are repressed by lanceolate (LA), which was regulated by miR319.
[PMID: 23771895] - Over-expression of FUL2 resulted in a pointed tip at the blossom end of the fruit, together with a thinner pericarp, reduced stem diameter, and smaller leaves, but no obvious phenotypes resulted from FUL1 over-expression.
[PMID: 24723399] - the FUL1/FUL2 loss-of-function phenotype in co-suppressed plants
[PMID: 25036675]
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Publications
? help Back to Top |
- Busi MV, et al.
MADS-box genes expressed during tomato seed and fruit development. Plant Mol. Biol., 2003. 52(4): p. 801-15 [PMID:13677468] - Litt A,Irish VF
Duplication and diversification in the APETALA1/FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development. Genetics, 2003. 165(2): p. 821-33 [PMID:14573491] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Pnueli L, et al.
The MADS box gene family in tomato: temporal expression during floral development, conserved secondary structures and homology with homeotic genes from Antirrhinum and Arabidopsis. Plant J., 1991. 1(2): p. 255-66 [PMID:1688249] - Bemer M, et al.
The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening. Plant Cell, 2012. 24(11): p. 4437-51 [PMID:23136376] - Burko Y, et al.
A role for APETALA1/fruitfull transcription factors in tomato leaf development. Plant Cell, 2013. 25(6): p. 2070-83 [PMID:23771895] - Wang S, et al.
Members of the tomato FRUITFULL MADS-box family regulate style abscission and fruit ripening. J. Exp. Bot., 2014. 65(12): p. 3005-14 [PMID:24723399] - Dong T, et al.
A non-climacteric fruit gene CaMADS-RIN regulates fruit ripening and ethylene biosynthesis in climacteric fruit. PLoS ONE, 2014. 9(4): p. e95559 [PMID:24751940] - Shima Y, et al.
Tomato FRUITFULL homologs regulate fruit ripening via ethylene biosynthesis. Biosci. Biotechnol. Biochem., 2014. 78(2): p. 231-7 [PMID:25036675] - Kang SG,Hannapel DJ
Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]
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