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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc06g068830.1.1 |
| Common Name | LOC101264530 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
ERF |
| Protein Properties |
Length: 290aa MW: 33183.3 Da PI: 9.3095 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g068830.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.1 | 6.1e-20 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa a+++a++k++g
Solyc06g068830.1.1 99 QYRGVRQRP-WGKWAAEIRDPE----KaARVWLGTFHTAEDAAIAYDEAALKFKG 148
69*******.**********73....35************************988 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDRIRRGKRR YESEEKEDRN YNHMYSSARS QHDMSTMVAV LSQVIGNKST TNTNSSSSSS 60
AHHKPLLTLN HQSNTTAAMQ NQLPQLNQQQ GNNEKRRRQY RGVRQRPWGK WAAEIRDPEK 120
AARVWLGTFH TAEDAAIAYD EAALKFKGNK AKLNFPERVQ STTDQFGISY LITNTNHQQH 180
QFQPTNFLPN SDQLQQHHYS NHNADDLKFG VSPSFYHPTG FNPKALDLVE PSKSSSMTYL 240
VQQASSHQVQ EEPRYINHQQ EDENNLKFSS YFGTYSSSGP TLGEFEDQK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215355 | 2e-08 | Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence |
| GenBank | AC233643 | 2e-08 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
| GenBank | AC233695 | 2e-08 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
Cell Rep, 2018. 22(5): p. 1350-1363
[PMID:29386120]
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