PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g068390.1.1 | ||||||||
Common Name | LOC101258965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20275.8 Da PI: 8.936 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Solyc06g068390.1.1 56 FSCNYCYRNFYSSQALGGHQNAH 78 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-6 | 52 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDSQNQSAQD DKQENNGLIL DLDLSLLCNW ELKPTDDQII KTTNHTCDGE TEHQVFSCNY 60 CYRNFYSSQA LGGHQNAHKR ERTTMAKRKH SMDSIPIMHR PPPAIQAHSM THKPNISSNT 120 FRAPAIPTSL YNTHSAPMWS KRRRDQFPVI GRPERNKFST VVGSQEDLKK LDLSLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.661 | 0.0 | cell culture| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g068390.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241683.1 | 1e-133 | zinc finger protein 3 | ||||
TrEMBL | A0A3Q7GWW5 | 1e-132 | A0A3Q7GWW5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g068390.1.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15930 | 6 | 6 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 4e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g068390.1.1 |
Entrez Gene | 101258965 |
Publications ? help Back to Top | |||
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