PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 205aa MW: 23243.7 Da PI: 9.1183

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g065820.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.5e-18	7	55	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + Solyc06g065820.2.1 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69****9.******8.....334********************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.25E-36	6	66	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.2E-34	7	64	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-40	7	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.14	7	64	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-11	7	56	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.97E-21	7	66	IPR016177	DNA-binding domain
PRINTS	PR00367	3.4E-11	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-11	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MARAQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNMP QTSSSKLLST TLTAKLHKCY MASLQMTKTS PQGQKLAKNA TNVQESVINS 120 YKMKQQMLVP KPSVLLTHHD HHEEAKVVNL GVGVIRKVED QVLEGIPQFV KPLEDDHIEQ 180 MIEELLDYGS IELCSNVVPS HQIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-18	6	64	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.3692	0.0	callus\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g065820.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY077626	0.0	Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234848.1	1e-154	ethylene response factor H.1
Swissprot	Q94AW5	6e-73	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	Q8S9H4	1e-152	Q8S9H4_SOLLC; Ethylene response factor 1
STRING	Solyc06g065820.2.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1362	24	76
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	8e-53	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc06g065820.2.1
Entrez Gene	606713

Publications ? help Back to Top
Hongxing Z, et al. Cloning and DNA-binding properties of ethylene response factor, LeERF1 and LeERF2, in tomato. Biotechnol. Lett., 2005. 27(6): p. 423-8 [PMID:15834808] Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]