PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 498aa MW: 56986.6 Da PI: 4.3073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g063380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.7	9.4e-19	6	138	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeek.ew.yfFskrdkkyatgkrknr..atksgy 82 G+rFhPtd+el+ yL + +++++l + +i+e+d+y+ +Pw + + +++ + yf s+r+kk+ + r +r a g+ Solyc06g063380.1.1 6 EGYRFHPTDSELL-TYLLRFITENNLCDNGFITECDVYNQQPWITYGygrhcggQ-DDGDTnNFrYFISPRHKKSDN--RFSRhvANGLGT 92 69*********.88999999999777799********986346655432.223332335888888888765..666632555789 PP NAM 83 Wkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyr 127 Wk+ k k + sk+++ +glkk+L + + ++ +W+m+ey Solyc06g063380.1.1 93 WKQRDKGKWIRSKQSKPlnMGLKKSLDYD-TNICCPHDGKWLMKEYV 138 ********86655569***97.66677789******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.458	4	163	IPR003441	NAC domain
Pfam	PF02365	5.7E-15	6	138	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-20	7	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MEFEEEGYRF HPTDSELLTY LLRFITENNL CDNGFITECD VYNQQPWITY GYGRHCGGQD 60 DGDTNNFRYF ISPRHKKSDN RFSRHVANGL GTWKQRDKGK WIRSKQSKPL NMGLKKSLDY 120 DTNICCPHDG KWLMKEYVFC EAILKKFKNS NYKDYCICAI KRKNSSNPSP SSNASTTDLN 180 EHKLDTEVIS GINSVEPRMD QAITPINIVE PVLRIQESLS DEEKINALLI EYNIDPELTK 240 MRNEDYGMIN HPINVVENPA MEAEVQGNGV SEFENTIPEN NLPVHQQQGF IVDVNEDCNA 300 YSEFQANNSS FVGLLTGYGD YAIRNNWELN TFSPIQEPMI PDFANVKSNI TMPEIYGTLT 360 EYMDADVLMN PENAFDFSKQ SIVESNQVQI TQEAAAGEAN RLLGQTAPFF QIQEFVMPEM 420 FDMGYTLLET QQEPKPQEEC KTLCETEKSS FLDDLTEALL DDVPLNDRLN INRESKITLL 480 LDQQSWESNA HLQDMLL*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MEFEEEGYRF HPTDSELLTY LLRFITENNL CDNGFITECD VYNQQPWITY GYGRHCGGQD  60
DGDTNNFRYF ISPRHKKSDN RFSRHVANGL GTWKQRDKGK WIRSKQSKPL NMGLKKSLDY  120
DTNICCPHDG KWLMKEYVFC EAILKKFKNS NYKDYCICAI KRKNSSNPSP SSNASTTDLN  180
EHKLDTEVIS GINSVEPRMD QAITPINIVE PVLRIQESLS DEEKINALLI EYNIDPELTK  240
MRNEDYGMIN HPINVVENPA MEAEVQGNGV SEFENTIPEN NLPVHQQQGF IVDVNEDCNA  300
YSEFQANNSS FVGLLTGYGD YAIRNNWELN TFSPIQEPMI PDFANVKSNI TMPEIYGTLT  360
EYMDADVLMN PENAFDFSKQ SIVESNQVQI TQEAAAGEAN RLLGQTAPFF QIQEFVMPEM  420
FDMGYTLLET QQEPKPQEEC KTLCETEKSS FLDDLTEALL DDVPLNDRLN INRESKITLL  480
LDQQSWESNA HLQDMLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g063380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887134.1	0.0	NAC domain containing protein 52-like
TrEMBL	A0A3Q7GYD7	0.0	A0A3Q7GYD7_SOLLC; Uncharacterized protein
STRING	Solyc06g063380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14273	5	7
Representative plant	OGRP5881	2	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-13	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Solyc06g063380.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]