PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 373aa MW: 41477.8 Da PI: 4.7974

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g063070.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.3	1.9e-18	102	151	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++a +++++g Solyc06g063070.2.1 102 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDAEARRIRG 151 69*****.******954...3**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-31	102	161	IPR001471	AP2/ERF domain
CDD	cd00018	5.35E-32	102	160	No hit	No description
SMART	SM00380	2.8E-36	102	165	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.775	102	159	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-22	102	161	IPR016177	DNA-binding domain
PRINTS	PR00367	5.8E-11	103	114	IPR001471	AP2/ERF domain
Pfam	PF00847	4.8E-11	103	151	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.8E-11	125	141	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MCGGAIISDL VPPSRISRRL TADFLWGTSD LNKKKKNPSN YHSKPLRSKF IDLEDEFEAD 60 FQHFKDNSDD DDDVKAFGPK SVRSGDSNCE ADRSSKRKRK NQYRGIRQRP WGKWAAEIRD 120 PRKGIRVWLG TFNSAEEAAR AYDAEARRIR GKKAKVNFPD EAPVSVSRRA IKQNPQKALR 180 EETLNTVQPN MTYISNLDGG SDDSFSFFEE KPATKQYGFE NVSFTAVDMG LGSVSPSAGT 240 NVYFSSDEAS NTFDCSDFGW AEPCARTPEI SSVLSEVLET NETHFDDDSR PEKKLKSCSS 300 TSLTVDGNTV NTLSEELSAF ESQMKFLQIP YLEGNWDASV DAFLNTSAIQ DGGNAMDLWS 360 FDDVPSLMGG AY*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MCGGAIISDL VPPSRISRRL TADFLWGTSD LNKKKKNPSN YHSKPLRSKF IDLEDEFEAD  60
FQHFKDNSDD DDDVKAFGPK SVRSGDSNCE ADRSSKRKRK NQYRGIRQRP WGKWAAEIRD  120
PRKGIRVWLG TFNSAEEAAR AYDAEARRIR GKKAKVNFPD EAPVSVSRRA IKQNPQKALR  180
EETLNTVQPN MTYISNLDGG SDDSFSFFEE KPATKQYGFE NVSFTAVDMG LGSVSPSAGT  240
NVYFSSDEAS NTFDCSDFGW AEPCARTPEI SSVLSEVLET NETHFDDDSR PEKKLKSCSS  300
TSLTVDGNTV NTLSEELSAF ESQMKFLQIP YLEGNWDASV DAFLNTSAIQ DGGNAMDLWS  360
FDDVPSLMGG AY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	102	159	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	3e-20	101	161	13	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.444	0.0	flower\| fruit\| leaf\| root\| stem\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g063070.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY044235	0.0	Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234513.1	0.0	transcription factor JERF1
TrEMBL	Q8LGR9	0.0	Q8LGR9_SOLLC; JERF1
STRING	Solyc06g063070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1446	24	66
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	2e-67	related to AP2 12

Link Out ? help Back to Top
Phytozome	Solyc06g063070.2.1
Entrez Gene	544182

Publications ? help Back to Top
Zhang H, et al. The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. Planta, 2004. 220(2): p. 262-70 [PMID:15300440] Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]