PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g062670.2.1 | ||||||||
Common Name | LOC101244006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 56295.1 Da PI: 8.5913 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.9e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Solyc06g062670.2.1 70 FFCEICNKGFQRDQNLQLHRRGH 92 67*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.33E-6 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.044 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.6E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.72 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.33E-6 | 142 | 167 | No hit | No description |
SMART | SM00355 | 150 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS 60 PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT 180 IFSRRDSFIT HRAFCETLAM ESARSVINER NPTIFSPQMN LQFQQPHYFN SHEQIQAATF 240 PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINPSPSVP LSNFSSSSIF PATTRLDQQY 300 SQSSHKDLNL HHQNPNPNLR GPTLGYDSMG ESGVVSPVHI SATALLQKAA QFGATISNKA 360 SAVTATAAYT GTAKIPHNTH VSVTSTDSAT KQTQQKLSSR EDLTTITGPA NNISGIMTSF 420 SNGFDGSTMF EDAILFGGFN NLNSKKENED EDQQLYFNGS MNEEDHILTK DFLGLKPLSH 480 TDDIFNIAAL VNTEFKNHKT WQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-30 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-30 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 109 | KLKKRENKEVVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g062670.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308268.1 | 0.0 | zinc finger family protein | ||||
Refseq | NP_001308269.1 | 0.0 | zinc finger family protein | ||||
TrEMBL | A0A3Q7GUL6 | 0.0 | A0A3Q7GUL6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g062670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 3e-99 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g062670.2.1 |
Entrez Gene | 101244006 |
Publications ? help Back to Top | |||
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