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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc06g060940.1.1 |
| Common Name | LOC101247728 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GATA |
| Protein Properties |
Length: 539aa MW: 59785.2 Da PI: 8.4118 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g060940.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 49.4 | 6.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+
Solyc06g060940.1.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
****************66666***********997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RPESDDLDDY 60
RVCRVKNMSL KNKEAKVLKQ KQNHDNTVVR TPPDYYQGFL KSLDEDTSNR SSSGSAISNT 120
ESSAQFGSTE ASDLTGPAQS NKWEAMVPSR KRTCISRSKH SSVEKLTKDL CTILHEQQSS 180
YFSGSSEEDL LFESDKPMVS VEIGHGSVLI RHPNSIGREE ESEGSSLSVN NKRHYVNEAY 240
SRLSAPPVNI NRGVNLPNLG TEITKKPNSQ GMEQHPIKRD KDHLEKLHIL GHHTSPLCHI 300
DLKDVLNYEE FVTHFSSDEQ KQLLKYLAPV DSFAPPDSLK SMFHSSHFEE NLSSFQKLLA 360
EGVFDSSLPG VKLEDSRTLK RLILCYLTKS KWVEKYNLFK EPKCTSSANG NEVTGRPNAI 420
GTGHSGNVKR PLEGHHPKYA GAKKAMKSPK RVVMKSSYEQ KELVDNNNSC FSPKCLFPLP 480
SKSSPVLDSF HVTNDQDVLL DVPSNSSFAQ AELLLPTSNF AAQASTGSSS VYPHLVRP*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
