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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g059970.2.1 |
Common Name | LOC778306 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 215aa MW: 24867.4 Da PI: 9.4949 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g059970.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 85.7 | 2.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien+ nrqvt+skRrngi+KKA+E+ vLC+a+v++iif+s+gk++ey+s
Solyc06g059970.2.1 9 KRIENTNNRQVTYSKRRNGIIKKAKEITVLCEAKVSLIIFASSGKMHEYCS 59
79***********************************************96 PP
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2 | K-box | 77.4 | 3.6e-26 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged+++L++keL +e++L+++l++i +k++e+l++ ++ q e+e+++ +
Solyc06g059970.2.1 71 YQKASGRRLWDAKHENLSNEIDRIKKENDSMQVKLRHLKGEDINQLTHKELIIMEEALQNGLSSISAKQSEILRMVRKNDQILEEENKQLQ 161
8999*************************************************************************************** PP
K-box 92 kaLrkkl 98
aL++k
Solyc06g059970.2.1 162 YALHQKE 168
****996 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 5.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.12E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-16 | 82 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.714 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MGRGKIEIKR IENTNNRQVT YSKRRNGIIK KAKEITVLCE AKVSLIIFAS SGKMHEYCSP 60 STTISDMLDG YQKASGRRLW DAKHENLSNE IDRIKKENDS MQVKLRHLKG EDINQLTHKE 120 LIIMEEALQN GLSSISAKQS EILRMVRKND QILEEENKQL QYALHQKEMG AIGGSGNMRG 180 IHEEVYHQRE RDYEYQMPFG LRVQPMQPNL HERM*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the genetic control of flower development. |
Publications
? help Back to Top |
- Immink RG, et al.
Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - de Martino G,Pan I,Emmanuel E,Levy A,Irish VF
Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell, 2006. 18(8): p. 1833-45 [PMID:16844904] - Kush A,Brunelle A,Shevell D,Chua NH
The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]
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