PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g054630.1.1
Common NameLOC101268766
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 238aa    MW: 26630.1 Da    PI: 4.8371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g054630.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171060155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++kGVr +k +g+Wv+e+r p++   r r++lg++++ae+Aa+a +aa  +l+g
  Solyc06g054630.1.1 10 PKFKGVRLRK-WGKWVSEVRLPNS---RDRIWLGSYDSAEKAARAFDAAQFCLRG 60
                        79******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.96E-291070No hitNo description
PfamPF008471.2E-111060IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-281170IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-191170IPR016177DNA-binding domain
SMARTSM003802.9E-301174IPR001471AP2/ERF domain
PROSITE profilePS5103220.8241168IPR001471AP2/ERF domain
PRINTSPR003672.6E-81223IPR001471AP2/ERF domain
PRINTSPR003672.6E-83450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENNSTHDQP KFKGVRLRKW GKWVSEVRLP NSRDRIWLGS YDSAEKAARA FDAAQFCLRG  60
PKAKFNFPDS PPDISGGQRL SPAEIQAVAA RFANDYSPSV VQEIRRDDHH HDHEGNIGNI  120
NSHVINMEKD EISLSTTSCD RVVQMGTSNT VAEMDWAFHN DMMENYSYNA SGPPPEYFCD  180
PYYIVGGGGG AGVLDNLSSN LYSPPHFPQR TTPSYDDDDT GNGDDEHYSQ QSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-138681172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.104660.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g054630.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241075.11e-180ethylene-responsive transcription factor ERF016-like
TrEMBLM1D1781e-137M1D178_SOLTU; Uncharacterized protein
STRINGSolyc06g054630.1.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-46ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]