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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc06g053960.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 143aa MW: 16643.7 Da PI: 9.9024 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g053960.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.8 | 2.3e-35 | 33 | 125 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+ye+++d+++++++sws+ nsf+v+d++++a + Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk+
Solyc06g053960.2.1 33 FLTKTYELVDDPSNNDVVSWSRGYNSFIVWDPQNLAINFLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFLRGKKH 114
9*****************************************************************99.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r+k +
Solyc06g053960.2.1 115 LLRTIRRRKPS 125
********976 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 143 aa
Download sequence Send
to blast |
MDHFGNLIKE EFDGSFLTPQ PKECLHENGP PPFLTKTYEL VDDPSNNDVV SWSRGYNSFI 60 VWDPQNLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPDH WEFANEGFLR GKKHLLRTIR 120 RRKPSNFIKS SSSINNQASK GY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP011551 | 7e-07 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0087H10, complete sequence |