PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g051570.2.1
Common NameLOC101253595
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-X1
Protein Properties Length: 867aa    MW: 96505.9 Da    PI: 8.3517
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g051570.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.41.9e-05181199120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG H C  lCH+GpCp+Cp+
  Solyc06g051570.2.1 181 CG-HNCLLLCHPGPCPSCPK 199
                         **.***************96 PP
2zf-NF-X116.61.7e-05235252320
            zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                          H+C+++CH  +CppC++
  Solyc06g051570.2.1 235 THRCNEICHADDCPPCKA 252
                         5***************95 PP
3zf-NF-X120.41.1e-06286305120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+HkC+k CHeG+C+ Cp+
  Solyc06g051570.2.1 286 CGRHKCEKGCHEGDCGDCPL 305
                         ******************95 PP
4zf-NF-X117.87.4e-06393412120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CGkH C++ C+ G+CppC++
  Solyc06g051570.2.1 393 CGKHACKRRCCDGDCPPCSE 412
                         ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.18E-571141No hitNo description
PROSITE patternPS01359072135IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.74272136IPR001841Zinc finger, RING-type
CDDcd060084.62E-6169217No hitNo description
SMARTSM004380.016181199IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022181198IPR000967Zinc finger, NF-X1-type
CDDcd060082.55E-7223271No hitNo description
SMARTSM004384.3E-4233252IPR000967Zinc finger, NF-X1-type
PfamPF014220.026233251IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-9276315No hitNo description
SMARTSM004388.7E-4286305IPR000967Zinc finger, NF-X1-type
PfamPF014224.9E-4286304IPR000967Zinc finger, NF-X1-type
CDDcd060084.63E-10330379No hitNo description
SMARTSM004380.16340360IPR000967Zinc finger, NF-X1-type
PfamPF014220.0056340359IPR000967Zinc finger, NF-X1-type
CDDcd060081.58E-8383431No hitNo description
SMARTSM004380.012393412IPR000967Zinc finger, NF-X1-type
PfamPF014220.0019393411IPR000967Zinc finger, NF-X1-type
CDDcd060088.79E-10410458No hitNo description
SMARTSM004380.0037420439IPR000967Zinc finger, NF-X1-type
PfamPF014220.016420438IPR000967Zinc finger, NF-X1-type
SMARTSM00438130477498IPR000967Zinc finger, NF-X1-type
PfamPF014221.6487497IPR000967Zinc finger, NF-X1-type
SMARTSM0043865506551IPR000967Zinc finger, NF-X1-type
PfamPF0142228506515IPR000967Zinc finger, NF-X1-type
SMARTSM0043828588621IPR000967Zinc finger, NF-X1-type
PfamPF014220.3588598IPR000967Zinc finger, NF-X1-type
SMARTSM004380.075631649IPR000967Zinc finger, NF-X1-type
PfamPF014223.5633648IPR000967Zinc finger, NF-X1-type
SMARTSM004386694715IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MISTSTTPAP LLSPPSSDSD SDSSSHRHHH SDLSSTIFKS YLELSGDHHN QKHDLIKIQA  60
FLTSSRSGAL SCLICLERIR PSDPTWSCSS RCFAVFHLHC IQSWGVQSSN LAAVRAITRA  120
ATPNDSSLLW HCPKCRVEYS KSQIPKTYYC FCGKLPDPPH DPWVLPHSCG EICGRPLMYN  180
CGHNCLLLCH PGPCPSCPKL VTSKCFCGAV EDVKRCGFKN FSCNGVCKKM LDCNTHRCNE  240
ICHADDCPPC KAKGMFNCQC GKVEMKRECF DRVFRCENPC EKLLGCGRHK CEKGCHEGDC  300
GDCPLQGKRT CPCGKIFYEG IACDVMVSVC GATCGKMLSC GFHRCPERCH RGPCVETCRL  360
VVTKSCRCGS YKKQVPCHQH MTCERKCQKL RDCGKHACKR RCCDGDCPPC SEMCERKLRC  420
RNHKCPAPCH RGSCAPCPVM VTISCLCGET HFEVPCGAEA EQKPPKCRKS CCVGRLCRHA  480
SNCKPHRCHY GACPPCRLLC DEEYPCGHKC ELRCHGPRPP PLPEFTLKSK KKRPNNQIEP  540
TPGSPCPPCP QLVWRSCLGN HVGAERMMVC SDRATFSCDN LCGNPLACGN HYCTNVCHTL  600
VTSTSKLDSS SRAETCEKCT LPCQQERRPT CPHPCPLSCH PGECPPCKAL IKRSCHCGSM  660
VHVFECIYYN SLSAKEQLTV RSCGGPCHRK LPNCTHLCPE TCHPGECPSP DQCSKKVNVR  720
CGCQSFKKEL LCKDVQAAYR SSGTDPKDVS RNQYGLGLLP CNSDCRSKMK ASEAELQHRK  780
SKAPEEKEPE TKDNATKRRR RRVRVLEDEK TSTLQSIVAG IRRFLLFVIT IIALIASVYL  840
GYKGLQWLSE RMNEAEIQRQ RRYART*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1796801KRRRRR
2796802KRRRRRV
3850861RMNEAEIQRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.138890.0flower| fruit
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43805560.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g051570.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6782980.0Lycopersicon esculentum clone 56B23 chromosome 6, genomic sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240941.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0V0IUT70.0A0A0V0IUT7_SOLCH; Putative NF-X1-type zinc finger protein NFXL2-like
STRINGSolyc06g051570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]