PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g051120.2.1
Common NameLOC101246435
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 257aa    MW: 29269.8 Da    PI: 9.747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g051120.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.6e-1521104186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Liea  ++  rl+rg+l++++W+ev+  +  r+ g+  +r+ +qCk++++ l+k+yk +k+ +        s++p++++l+
  Solyc06g051120.2.1  21 CWSEGATETLIEAWGDRYLRLNRGNLRQKDWKEVAYSVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKNKSTP------SKWPFYNRLD 104
                         7*************************************88777776689*****************99988875......58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2619104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENQTTTQNT FRPHAGGRED CWSEGATETL IEAWGDRYLR LNRGNLRQKD WKEVAYSVNS  60
RQNGVKPQRT DVQCKNRIDT LKKKYKLEKN KSTPSKWPFY NRLDYLIATN NVSASPCNRR  120
PSASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL  180
SEDTTAFKEL ARAILRFGEI YERIESSKQQ QMMELEKQRM EFTKDLEVQR MNMFMETQLQ  240
IERSKCAAKH PPSAGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g051120.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240916.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG83e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3Q7GT180.0A0A3Q7GT18_SOLLC; Uncharacterized protein
STRINGSolyc06g051120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-62sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]