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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g050950.2.1 | ||||||||
Common Name | LOC104647955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19129.8 Da PI: 5.1713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.4 | 2.6e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasn++k+l+++p +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ Solyc06g050950.2.1 7 PCASCKLLRRRCAKDCIFSPYFPCDDPHKFAIVHKVFGASNISKMLQEVPVNERADAVSSLVYEANARMRDPVYGCVGAISYLQNQVMQLQ 97 7****************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Solyc06g050950.2.1 98 MQLAMAQAE 106 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.379 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDPHKFAIVH KVFGASNISK MLQEVPVNER 60 ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVMQLQMQL AMAQAEILCI QMQSETPQVE 120 AATVLPITPD NQLVENDHDI DKSFFLSDQY LNFDSTSHKS CNSQDGLFLW R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 2 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 2 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g050950.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322163.1 | 1e-127 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 7e-71 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A3Q7GVM8 | 1e-125 | A0A3Q7GVM8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g050950.2.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-60 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g050950.2.1 |
Entrez Gene | 104647955 |
Publications ? help Back to Top | |||
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