PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g050840.2.1

Common Name

LOC101268000

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 160aa MW: 17852.1 Da PI: 4.7325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g050840.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00058	4	44	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 rE++R + + ++++ Lr++ + a ls ++i A +YI++L Solyc06g050840.2.1 4 REQKRASVLHDKLQLLRSITKShA-------LSESSIIVDASKYIQEL 44 8****************98855.......*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-6	3	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-6	4	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.46E-4	84	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKHKVER LNQDITTTTP 60 QTNSNNNTSS WPQIEVETLE KGFLVNVYSE RSCPGLLVSI LQVLEDLGLN VLEARVSCTD 120 TFRLQAFGGE DEETMINAQV VTEAVFEAIK NWSESKEQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g050840.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC219225	6e-94	Solanum lycopersicum chromosome 6 clone C06SLm0082G10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240904.1	1e-114	transcription factor bHLH61
Refseq	XP_015077805.1	1e-114	transcription factor bHLH61-like
TrEMBL	A0A0V0H5W5	1e-104	A0A0V0H5W5_SOLCH; Putative transcription factor bHLH61-like
TrEMBL	M1CPH7	1e-104	M1CPH7_SOLTU; Uncharacterized protein
STRING	Solyc06g050840.2.1	1e-113	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2945	9	11
Representative plant	OGRP1907	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10570.1	3e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc06g050840.2.1
Entrez Gene	101268000

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]