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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g048380.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20038.6 Da PI: 4.9038 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.8 | 5.7e-13 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ie+ + rq +sk + i KK +EL LCd+++a++++s++g++ Solyc06g048380.1.1 9 KIIEDPISRQQFYSKCKDSIVKKSNELGLLCDTNIALLMVSPNGEVT 55 5699****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.871 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-16 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.33E-13 | 3 | 54 | No hit | No description |
Pfam | PF00319 | 1.8E-13 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDRNKIMIKI IEDPISRQQF YSKCKDSIVK KSNELGLLCD TNIALLMVSP NGEVTSCSGG 60 ESFEDIMSNA MNQFDELNRH SYEPQAENIN TVEEADAYEQ YLLGAIGRIQ LSKAKFLDNQ 120 EFLKRNENVA EPVRDGRPER NILDHNGCSC SRNYVILVYI LKLSTMNNLH QASKQD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g048380.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243358 | 9e-07 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-30f7 map 1, complete sequence | |||
GenBank | AC246754 | 9e-07 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-59a11 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078433.1 | 3e-79 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A3Q7GS71 | 5e-71 | A0A3Q7GS71_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g048380.1.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 2e-13 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g048380.1.1 |
Publications ? help Back to Top | |||
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