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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g035700.1.1 | ||||||||
Common Name | LOC101268109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19263.4 Da PI: 4.5739 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.2 | 5.5e-15 | 29 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r++ +g+Wv+eIr+p++ ++r++lg+f +e+Aa a++ a+++l+g Solyc06g035700.1.1 29 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFPIPEMAAVAYDVAALALKG 77 589**975..6*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-9 | 28 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-28 | 28 | 86 | No hit | No description |
PROSITE profile | PS51032 | 19.612 | 29 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-30 | 29 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 30 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-7 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MAAYHFNDNS PSLENLSPTG GGSSTRHPNF RGIRQRNGKW VSEIREPRKT TRIWLGTFPI 60 PEMAAVAYDV AALALKGPDA QLNFPDRAYS YPVPASLSAA DIRTAAANAA AARAPPLSEI 120 NTAAGGGQGQ EFVDEEEIFG MPKLLDDMAE AMLVSPPRMH QYDESPENSD ADSLWGYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-13 | 16 | 85 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13690 | 0.0 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5889589 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g035700.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240742.1 | 1e-129 | ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 1e-51 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A3Q7GUB5 | 1e-128 | A0A3Q7GUB5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g035700.1.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g035700.1.1 |
Entrez Gene | 101268109 |
Publications ? help Back to Top | |||
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