PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g035490.2.1

Common Name

LOC101245065

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 266aa MW: 30309.1 Da PI: 6.996

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g035490.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	85	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + ++ Lr+ lP + ++K s ++ +A +YI +Lq Solyc06g035490.2.1 85 KKVMHREIERQRRQEMSTLYASLRQQLPLeN---IKGKRSTSDHILEAANYIEQLQ 137 6899***********************66...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-14	81	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-10	82	141	No hit	No description
PROSITE profile	PS50888	13.116	84	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-10	85	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-10	86	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-4	90	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MDNFHSIFPL QPDDDANYDS HQQQLIFPHE TYTNPCNFIY QQDLVNDFAS FDSLELRDNN 60 LTFNNNTNNN QKGKSCGVED KKKHKKVMHR EIERQRRQEM STLYASLRQQ LPLENIKGKR 120 STSDHILEAA NYIEQLQKNV KNLEEKREKL MKDSTGLSNV DGINKSGRST SRHCSPPAIV 180 TVKECLDGME ILVNCGLGFR LSRVLQVLLQ EGLSIVNCSS TKTNTSSLLH TIRTEVSSTD 240 QPRIINVDVI QQKLTDIIHD DTSFK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16423	0.0	fruit\| leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g035490.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC211020	0.0	Solanum lycopersicum chromosome 6 clone C06HBa0003K02, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333234.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TrEMBL	A0A3Q7GQ83	0.0	A0A3Q7GQ83_SOLLC; Uncharacterized protein
STRING	Solyc06g035490.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc06g035490.2.1
Entrez Gene	101245065

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]