PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 237aa MW: 27326.9 Da PI: 6.798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g034000.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++lvd++ ++ +W+ ++ g+ Rt+k+c++rw +yl Solyc06g034000.1.1 6 KGAWSPDEDQKLVDYIMKYRIWNWSHMPKFAGLSRTGKSCRLRWINYL 53 79***************999**********************97 PP
2	Myb_DNA-binding	43.8	6e-14	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+++ eE e+ ++ + lG++ W++Ia++++ gRt++++k++++++l Solyc06g034000.1.1 59 KGPFSIEEVEIVIRMYQSLGNR-WSAIAKELP-GRTDNEIKNFYHTHL 104 799*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.547	1	53	IPR017930	Myb domain
SuperFamily	SSF46689	1.92E-27	4	100	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-11	5	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-12	6	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-21	7	60	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-8	8	53	No hit	No description
PROSITE profile	PS51294	22.154	54	108	IPR017930	Myb domain
SMART	SM00717	1.3E-13	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-12	59	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-24	61	108	IPR009057	Homeodomain-like
CDD	cd00167	1.72E-9	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDYVKKGAWS PDEDQKLVDY IMKYRIWNWS HMPKFAGLSR TGKSCRLRWI NYLRPDLKKG 60 PFSIEEVEIV IRMYQSLGNR WSAIAKELPG RTDNEIKNFY HTHLKKHLGT KVEVKPKSRK 120 KAKQIEMSTQ KKPLITNCPN IQSLDFTNSS SSSSYITFDE NYDFLETSNQ HNDVTSIVNQ 180 VDDENIVILE SNPDDTTSSS SSVDLHIKDF MDVSVDSSNV VDFWLELYMA ADNLKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-24	6	110	7	110	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g034000.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010802	3e-07	Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240768.1	1e-176	transcription factor MYB30
TrEMBL	A0A3Q7GR98	1e-175	A0A3Q7GR98_SOLLC; Uncharacterized protein
STRING	Solyc06g034000.1.1	1e-175	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-47	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Solyc06g034000.1.1
Entrez Gene	101251784

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]