PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 248aa MW: 28586.3 Da PI: 8.1846

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g033870.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	8e-14	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d ++++ +W+ ++ g+ Rt+k+c++rw +yl Solyc06g033870.1.1 19 KGAWSPQEDKKLIDHIAKYRIWNWSQMPKFAGLSRTGKSCRLRWINYL 66 79***************999**********************97 PP
2	Myb_DNA-binding	39.4	1.4e-12	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE + +++ + lG++ ++Ia++++ gRt++++k++++++l Solyc06g033870.1.1 72 RGTFSLEETQTIIKMYQSLGNR-RSAIAKELP-GRTDNEIKNFYHTHL 117 899*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.81	14	70	IPR017930	Myb domain
SuperFamily	SSF46689	1.15E-25	17	113	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-11	18	68	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-21	20	73	IPR009057	Homeodomain-like
CDD	cd00167	1.10E-8	21	66	No hit	No description
Pfam	PF13921	1.3E-12	22	82	No hit	No description
SMART	SM00717	1.6E-10	71	119	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.436	71	121	IPR017930	Myb domain
CDD	cd00167	5.21E-8	74	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.5E-21	74	120	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGEVVFQLQH GKNMGYVKKG AWSPQEDKKL IDHIAKYRIW NWSQMPKFAG LSRTGKSCRL 60 RWINYLRPDI KRGTFSLEET QTIIKMYQSL GNRRSAIAKE LPGRTDNEIK NFYHTHLKKH 120 VGTKVEVKPK SRKKAKQIEM STQKKPLITT NCPNIQSFDF TNSSSSSSYI IFDENYDFLE 180 TYNQENDVTS IVNQVDDENI VILESNPESI STSSVDLYIQ DFMDVSIDSS NVDFWLELYM 240 AADNLNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-23	19	121	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g033870.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU468639	2e-11	S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078427.1	0.0	transcription factor MYB14-like
TrEMBL	K4C4L1	0.0	K4C4L1_SOLLC; Uncharacterized protein
STRING	Solyc06g033870.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-49	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Solyc06g033870.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]