PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g033830.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 114aa MW: 13058.8 Da PI: 8.4357 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 7.8e-17 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie+ r+ +skR+ g+ KK +EL v C +++a+++fs+tg++ +ys Solyc06g033830.1.1 9 KKIEDPESRKHFYSKRKDGLVKKSNELGVVCHTNIALLMFSPTGEVTTYS 58 689999999****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.236 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-20 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.26E-17 | 2 | 58 | No hit | No description |
PRINTS | PR00404 | 8.8E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-18 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MGRNKVVMKK IEDPESRKHF YSKRKDGLVK KSNELGVVCH TNIALLMFSP TGEVTTYSRA 60 KSSYEPQVEN INNVEEADAY KGYLLGAMER VQRSKEPLGD ERFDELNWIT MER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g033830.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244738 | 2e-06 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-67k3 map 10, complete sequence | |||
GenBank | AC244906 | 2e-06 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-1f11 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322056.1 | 2e-52 | MADS-box protein defh21-like | ||||
TrEMBL | K4C4K7 | 5e-79 | K4C4K7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g033830.1.1 | 9e-80 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA28245 | 2 | 2 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22630.1 | 5e-15 | AGAMOUS-like 17 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g033830.1.1 |
Publications ? help Back to Top | |||
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