PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 298aa MW: 34405.2 Da PI: 4.727

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g009710.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl Solyc06g009710.2.1 14 RGRWTSEEDEILTNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	48.6	1.9e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++ + lG++ W++Ia++++ gRt++++k++w+++l Solyc06g009710.2.1 67 RGNITSDEEAIIIKLRATLGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.099	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.63E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.05E-7	16	61	No hit	No description
PROSITE profile	PS51294	24.06	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-9	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051555	Biological Process	flavonol biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGRTPCCEKV GLKRGRWTSE EDEILTNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKSDLKRGNI TSDEEAIIIK LRATLGNRWS LIAEHLPGRT DNEIKNYWNS HLRRKVDSFR 120 IPGDEKLPQA VVELAKKGTQ VKHITKRGRS RRKIITRVSN STNENIEFDH IDDQMLWHDD 180 IVPMDANYEV LDQDFITNCL WDDQGENLEI TDDNDNNNNN NEILSEDNYG KWDWEYLSEI 240 LNNEICGNST KETEQNNNNN NMSLCDINDN VQNCMNKEAT QENIDPMQSD LVAWLLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00627	PBM	Transfer from PK06182.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g009710.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240653.1	0.0	transcription factor MYB111-like
TrEMBL	M1AB81	1e-168	M1AB81_SOLTU; Uncharacterized protein
STRING	Solyc06g009710.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-71	myb domain protein 111

Link Out ? help Back to Top
Phytozome	Solyc06g009710.2.1
Entrez Gene	101248582

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]