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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc06g008740.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 382aa MW: 41500.7 Da PI: 8.231 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc06g008740.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.8 | 3.1e-12 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+t++C+f++rtG C yG++C+++H+p
Solyc06g008740.2.1 44 GTSNCSFYMRTGSCGYGAKCRYNHPP 69
799*********************97 PP
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2 | zf-CCCH | 33.6 | 6.8e-11 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C++++rt tCk+G++CkF+H++
Solyc06g008740.2.1 90 EPTCQYYLRTATCKFGASCKFHHPR 114
689********************96 PP
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3 | zf-CCCH | 37.4 | 4.3e-12 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++C+++++tG+Ck+G +CkF+H+
Solyc06g008740.2.1 135 EERECSYYLKTGQCKFGITCKFHHP 159
5799********************9 PP
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4 | zf-CCCH | 41.5 | 2.3e-13 | 290 | 315 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+++++tG Ck+G++CkF+H+
Solyc06g008740.2.1 290 PGQPVCQYYMKTGDCKFGSSCKFHHP 315
5789*********************8 PP
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5 | zf-CCCH | 34.3 | 4.1e-11 | 339 | 362 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
C+f+++ G+Ck+G++CkF H++
Solyc06g008740.2.1 339 QSCSFYMQRGFCKFGGTCKFDHPM 362
56********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.957 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-10 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-6 | 45 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 93 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-5 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.173 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-7 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 291 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-6 | 294 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 341 | 360 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MELYGGSHSD RQSEWVPVGP ETGLEESMRR LGLWRREPYP ERSGTSNCSF YMRTGSCGYG 60 AKCRYNHPPD RSSVGAVLLE SSEYPERIGE PTCQYYLRTA TCKFGASCKF HHPRNLGGSL 120 SNISLNVYGY PLHPEERECS YYLKTGQCKF GITCKFHHPD HAEVSAPVTA RPFYPTSPSL 180 PVPPEEYNST STSSRVAGPQ LLPGPYVPGT YGPVLLHPGV VTIQNWSTYS GPVSPALSPG 240 AQPSAGMATI YGMPQLASST AAFAAPYSPL HSAAGPSSSA LRENRFPERP GQPVCQYYMK 300 TGDCKFGSSC KFHHPADWIA SKTDCTFSPL GLPLRPGVQS CSFYMQRGFC KFGGTCKFDH 360 PMGTVRYSPS ASSLPDIPNA P*
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